PNAS

Ancient DNA from Guam and the peopling of the Pacific

This contribution is part of the special series of Inaugural Articles by members of the National Academy of Sciences elected in 2020. Contributed by Mark Stoneking, November 12, 2020 (sent for review ...
Nature

Y chromosome sequence variation and the history of human populations

Figure 2: Maximum likelihood network inferred from the haplotype frequencies reported in Table 1. Three mutually reinforcing mutations, M42, M94 and M139 (two transversions and a 1-bp deletion), ...
C&EN

Impacts of the Mitochondrial Genome on the Relationship of Long-Term Ambient Fine Particle Exposure with Blood DNA Methylation Age

† Department of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, 02115, United States ‡ Department of Environmental Health Sciences, Columbia Mailman School of ...
GitHub

Yleaf: software for human Y-chromosomal haplogroup inference from next generation sequencing data

Operating system: Linux only. Internet connection: when running for the first time for downloading the reference genome. Alternatively you can configure your own references. Data storage: For ...
GitHub

ybyra: Y-chromosome phylogeny placement tool

Call Y-chromosome haplogroups from BAM files mapped to either hg37 or hg38 Use either ISOGG, yFull or FamilyTreeDNA (FTDNA) Y-SNP trees Apply an optional ancient DNA (aDNA) damage filter Plot ...